Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution

Shu Miaw Chaw; Yu Ching Liu; Yu Wei Wu; Han Yu Wang; Chan Yi Ivy Lin; Chung Shien Wu; Huei Mien Ke; Lo Yu Chang; Chih Yao Hsu; Hui Ting Yang; Edi Sudianto; Min Hung Hsu; Kun Pin Wu; Ling Ni Wang; James H. Leebens-Mack; Isheng J. Tsai

doi:10.1038/s41477-018-0337-0

Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution

Shu Miaw Chaw, Yu Ching Liu, Yu Wei Wu, Han Yu Wang, Chan Yi Ivy Lin, Chung Shien Wu, Huei Mien Ke, Lo Yu Chang, Chih Yao Hsu, Hui Ting Yang, Edi Sudianto, Min Hung Hsu, Kun Pin Wu, Ling Ni Wang, James H. Leebens-Mack, Isheng J. Tsai

研究成果: 雜誌貢獻 › 文章 › 同行評審

58 引文斯高帕斯（Scopus）

摘要

We present reference-quality genome assembly and annotation for the stout camphor tree (Cinnamomum kanehirae (Laurales, Lauraceae)), the first sequenced member of the Magnoliidae comprising four orders (Laurales, Magnoliales, Canellales and Piperales) and over 9,000 species. Phylogenomic analysis of 13 representative seed plant genomes indicates that magnoliid and eudicot lineages share more recent common ancestry than monocots. Two whole-genome duplication events were inferred within the magnoliid lineage: one before divergence of Laurales and Magnoliales and the other within the Lauraceae. Small-scale segmental duplications and tandem duplications also contributed to innovation in the evolutionary history of Cinnamomum. For example, expansion of the terpenoid synthase gene subfamilies within the Laurales spawned the diversity of Cinnamomum monoterpenes and sesquiterpenes.

原文	英語
頁（從 - 到）	63-73
頁數	11
期刊	Nature Plants
卷	5
發行號	1
DOIs	https://doi.org/10.1038/s41477-018-0337-0
出版狀態	已發佈 - 1月 1 2019

ASJC Scopus subject areas

植物科學

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10.1038/s41477-018-0337-0

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Chaw, S. M., Liu, Y. C., Wu, Y. W., Wang, H. Y., Lin, C. Y. I., Wu, C. S., Ke, H. M., Chang, L. Y., Hsu, C. Y., Yang, H. T., Sudianto, E., Hsu, M. H., Wu, K. P., Wang, L. N., Leebens-Mack, J. H., & Tsai, I. J. (2019). Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution. Nature Plants, 5(1), 63-73. https://doi.org/10.1038/s41477-018-0337-0

Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution. / Chaw, Shu Miaw; Liu, Yu Ching; Wu, Yu Wei; Wang, Han Yu; Lin, Chan Yi Ivy; Wu, Chung Shien; Ke, Huei Mien; Chang, Lo Yu; Hsu, Chih Yao; Yang, Hui Ting; Sudianto, Edi; Hsu, Min Hung; Wu, Kun Pin; Wang, Ling Ni; Leebens-Mack, James H.; Tsai, Isheng J.

於: Nature Plants, 卷 5, 編號 1, 01.01.2019, p. 63-73.

研究成果: 雜誌貢獻 › 文章 › 同行評審

Chaw, Shu Miaw ; Liu, Yu Ching ; Wu, Yu Wei ; Wang, Han Yu ; Lin, Chan Yi Ivy ; Wu, Chung Shien ; Ke, Huei Mien ; Chang, Lo Yu ; Hsu, Chih Yao ; Yang, Hui Ting ; Sudianto, Edi ; Hsu, Min Hung ; Wu, Kun Pin ; Wang, Ling Ni ; Leebens-Mack, James H. ; Tsai, Isheng J. / Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution. 於: Nature Plants. 2019 ; 卷 5, 編號 1. 頁 63-73.

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abstract = "We present reference-quality genome assembly and annotation for the stout camphor tree (Cinnamomum kanehirae (Laurales, Lauraceae)), the first sequenced member of the Magnoliidae comprising four orders (Laurales, Magnoliales, Canellales and Piperales) and over 9,000 species. Phylogenomic analysis of 13 representative seed plant genomes indicates that magnoliid and eudicot lineages share more recent common ancestry than monocots. Two whole-genome duplication events were inferred within the magnoliid lineage: one before divergence of Laurales and Magnoliales and the other within the Lauraceae. Small-scale segmental duplications and tandem duplications also contributed to innovation in the evolutionary history of Cinnamomum. For example, expansion of the terpenoid synthase gene subfamilies within the Laurales spawned the diversity of Cinnamomum monoterpenes and sesquiterpenes.",

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note = "Funding Information: We thank C.-y. Tsai for plant materials, C.-M. Hung for PSMC analysis and W.-Y. Ko for discussion branch site test. S.-M.C. was funded by an Investigators Award, Taiwan BioGenome Program and Biodiversity Research Center, Academia Sinica. I.J.T. was funded by a Career Development Award AS-CDA-107-L01, Academia Sinica. H.-M.K., C.-S.W. and C.-Y.H. were funded by a postdoctoral fellowship, Academia Sinica. Publisher Copyright: {\textcopyright} 2019, The Author(s), under exclusive licence to Springer Nature Limited.",

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Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution

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