Quality assurance of genotyping array for detection and typing of human papillomavirus

Ching Yu Lin, Hui Chi Chen, Ruey Wen Lin, San Lin You, Chiou Mien You, Li Chung Chuang, Mei Hung Pan, Mei Hsuan Lee, Yi Chun Chou, Chien Jen Chen

研究成果: 雜誌貢獻文章

41 引文 (Scopus)

摘要

The aim of this study was to evaluate the sensitivity, specificity, reliability and reproducibility of the EasyChip® HPV blot for human papillomavirus (HPV) genotyping. Type-specific sensitivity and specificity for 39 types of HPV (HPV 6, 11, 16, 18, 26, 31, 32, 33, 35, 37, 39, 42, 43, 44, 45, 51, 52, 53, 54, 55, 56, 58, 59, 61, 62, 66, 67, 68, 69, 70, 72, 74, 82, CP8061, CP8304, L1AE5, MM4, MM7 and MM8) were examined. The operating environment, reliability, reproducibility and blot interpretation were assessed by a quality assurance system. Each batch experiment contained samples from 89 cervical specimens and 7 extrinsic controls. Caski, HeLa and Jurkat cells, male human blood cell DNA and sterile water were used to assess reliability. Furthermore, pairs of sibling controls were used to assess reproducibility. The overall sensitivity of HPV detection was 1-50 copies of HPV genome equivalent. There was no cross-reactivity with amplicons of other HPV genotypes. One hundred batch experiments demonstrated that the reliability was excellent. The intra-batch and inter-batch reproducibility was 98 and 97%, respectively. It was concluded that the EasyChip® HPV blot is a highly sensitive, reliable and reproducible tool for detection and identification of HPV genotypes.
原文英語
頁(從 - 到)1-9
頁數9
期刊Journal of Virological Methods
140
發行號1-2
DOIs
出版狀態已發佈 - 三月 2007
對外發佈Yes

指紋

Genotype
Human papillomavirus 11
Human papillomavirus 6
Sensitivity and Specificity
Forensic Anthropology
Jurkat Cells
Human Genome
HeLa Cells
Blood Cells
Water
DNA

ASJC Scopus subject areas

  • Virology

引用此文

Quality assurance of genotyping array for detection and typing of human papillomavirus. / Lin, Ching Yu; Chen, Hui Chi; Lin, Ruey Wen; You, San Lin; You, Chiou Mien; Chuang, Li Chung; Pan, Mei Hung; Lee, Mei Hsuan; Chou, Yi Chun; Chen, Chien Jen.

於: Journal of Virological Methods, 卷 140, 編號 1-2, 03.2007, p. 1-9.

研究成果: 雜誌貢獻文章

Lin, CY, Chen, HC, Lin, RW, You, SL, You, CM, Chuang, LC, Pan, MH, Lee, MH, Chou, YC & Chen, CJ 2007, 'Quality assurance of genotyping array for detection and typing of human papillomavirus', Journal of Virological Methods, 卷 140, 編號 1-2, 頁 1-9. https://doi.org/10.1016/j.jviromet.2006.10.004
Lin, Ching Yu ; Chen, Hui Chi ; Lin, Ruey Wen ; You, San Lin ; You, Chiou Mien ; Chuang, Li Chung ; Pan, Mei Hung ; Lee, Mei Hsuan ; Chou, Yi Chun ; Chen, Chien Jen. / Quality assurance of genotyping array for detection and typing of human papillomavirus. 於: Journal of Virological Methods. 2007 ; 卷 140, 編號 1-2. 頁 1-9.
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abstract = "The aim of this study was to evaluate the sensitivity, specificity, reliability and reproducibility of the EasyChip{\circledR} HPV blot for human papillomavirus (HPV) genotyping. Type-specific sensitivity and specificity for 39 types of HPV (HPV 6, 11, 16, 18, 26, 31, 32, 33, 35, 37, 39, 42, 43, 44, 45, 51, 52, 53, 54, 55, 56, 58, 59, 61, 62, 66, 67, 68, 69, 70, 72, 74, 82, CP8061, CP8304, L1AE5, MM4, MM7 and MM8) were examined. The operating environment, reliability, reproducibility and blot interpretation were assessed by a quality assurance system. Each batch experiment contained samples from 89 cervical specimens and 7 extrinsic controls. Caski, HeLa and Jurkat cells, male human blood cell DNA and sterile water were used to assess reliability. Furthermore, pairs of sibling controls were used to assess reproducibility. The overall sensitivity of HPV detection was 1-50 copies of HPV genome equivalent. There was no cross-reactivity with amplicons of other HPV genotypes. One hundred batch experiments demonstrated that the reliability was excellent. The intra-batch and inter-batch reproducibility was 98 and 97{\%}, respectively. It was concluded that the EasyChip{\circledR} HPV blot is a highly sensitive, reliable and reproducible tool for detection and identification of HPV genotypes.",
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AU - Pan, Mei Hung

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AB - The aim of this study was to evaluate the sensitivity, specificity, reliability and reproducibility of the EasyChip® HPV blot for human papillomavirus (HPV) genotyping. Type-specific sensitivity and specificity for 39 types of HPV (HPV 6, 11, 16, 18, 26, 31, 32, 33, 35, 37, 39, 42, 43, 44, 45, 51, 52, 53, 54, 55, 56, 58, 59, 61, 62, 66, 67, 68, 69, 70, 72, 74, 82, CP8061, CP8304, L1AE5, MM4, MM7 and MM8) were examined. The operating environment, reliability, reproducibility and blot interpretation were assessed by a quality assurance system. Each batch experiment contained samples from 89 cervical specimens and 7 extrinsic controls. Caski, HeLa and Jurkat cells, male human blood cell DNA and sterile water were used to assess reliability. Furthermore, pairs of sibling controls were used to assess reproducibility. The overall sensitivity of HPV detection was 1-50 copies of HPV genome equivalent. There was no cross-reactivity with amplicons of other HPV genotypes. One hundred batch experiments demonstrated that the reliability was excellent. The intra-batch and inter-batch reproducibility was 98 and 97%, respectively. It was concluded that the EasyChip® HPV blot is a highly sensitive, reliable and reproducible tool for detection and identification of HPV genotypes.

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