MicrobPad MD: Microbial pathogen diagnostic methods database

Bor-Cheng Han, X. N. Wei, J. X. Zhang, N. Q. T. Truong, C. L. Westgate, R. Y. Zhao, Y. Z. Chen

研究成果: 雜誌貢獻文章

摘要

Medical pathogens induce infections, illnesses and sometimes serious medical conditions in the infected hosts. Diagnosis of these pathogens is important for proper treatment and investigation of pathogenesis processes. Molecular techniques have been developed for facilitating accurate, sensitive and low-cost diagnosis of these pathogens. Based on these techniques, diagnostic devices have been developed for a number of pathogens. More devices are needed for comprehensive coverage of medical pathogens. To facilitate the development of these devices, a database with integrated information about diagnostic methods, targets, and primers/probes for the known bacterial, fungal and viral pathogens is needed. We developed the microbial pathogen diagnostic methods database MicrobPad MD (http://bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp or http://pha-bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp) to provide comprehensive information about the molecular diagnostic techniques, targets, primers/probes, detection procedures and conditions, and tested diagnostic accuracies and limit of diagnosis for 314 bacterial, fungal and viral species from 61 genera. While available, additional information such as pathogen strains and hosts, tissue distribution or habitats, cultivation methods, biochemical characteristics, virulence factors, morphology, diseases, symptoms, treatment and prevention methods are provided. Our Database covers 242 gene targets, 700 primers/probes, 340 virulence factors, and 261 diseases. Cross-links to the NCBI genome and SwissProt/UniProt databases are provided. (C) 2012 Elsevier B.V. All rights reserved.
原文英語
頁(從 - 到)261-266
頁數6
期刊Infection, Genetics and Evolution
13
DOIs
出版狀態已發佈 - 一月 2013

指紋

diagnostic techniques
pathogen
Databases
pathogens
Virulence Factors
Viperidae
Equipment and Supplies
Molecular Diagnostic Techniques
probe
virulence
Protein Databases
Tissue Distribution
Ecosystem
method
Genome
tissue distribution
Costs and Cost Analysis
Infection
pathogenesis
genome

Keywords

  • Microbial pathogen
  • Diagnostic methods
  • Database

引用此文

Han, B-C., Wei, X. N., Zhang, J. X., Truong, N. Q. T., Westgate, C. L., Zhao, R. Y., & Chen, Y. Z. (2013). MicrobPad MD: Microbial pathogen diagnostic methods database. Infection, Genetics and Evolution, 13, 261-266. https://doi.org/10.1016/j.meegid.2012.10.017

MicrobPad MD : Microbial pathogen diagnostic methods database. / Han, Bor-Cheng; Wei, X. N.; Zhang, J. X.; Truong, N. Q. T.; Westgate, C. L.; Zhao, R. Y.; Chen, Y. Z.

於: Infection, Genetics and Evolution, 卷 13, 01.2013, p. 261-266.

研究成果: 雜誌貢獻文章

Han, B-C, Wei, XN, Zhang, JX, Truong, NQT, Westgate, CL, Zhao, RY & Chen, YZ 2013, 'MicrobPad MD: Microbial pathogen diagnostic methods database', Infection, Genetics and Evolution, 卷 13, 頁 261-266. https://doi.org/10.1016/j.meegid.2012.10.017
Han, Bor-Cheng ; Wei, X. N. ; Zhang, J. X. ; Truong, N. Q. T. ; Westgate, C. L. ; Zhao, R. Y. ; Chen, Y. Z. / MicrobPad MD : Microbial pathogen diagnostic methods database. 於: Infection, Genetics and Evolution. 2013 ; 卷 13. 頁 261-266.
@article{91a9454bf41d426ea6aaa6c7da6544cd,
title = "MicrobPad MD: Microbial pathogen diagnostic methods database",
abstract = "Medical pathogens induce infections, illnesses and sometimes serious medical conditions in the infected hosts. Diagnosis of these pathogens is important for proper treatment and investigation of pathogenesis processes. Molecular techniques have been developed for facilitating accurate, sensitive and low-cost diagnosis of these pathogens. Based on these techniques, diagnostic devices have been developed for a number of pathogens. More devices are needed for comprehensive coverage of medical pathogens. To facilitate the development of these devices, a database with integrated information about diagnostic methods, targets, and primers/probes for the known bacterial, fungal and viral pathogens is needed. We developed the microbial pathogen diagnostic methods database MicrobPad MD (http://bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp or http://pha-bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp) to provide comprehensive information about the molecular diagnostic techniques, targets, primers/probes, detection procedures and conditions, and tested diagnostic accuracies and limit of diagnosis for 314 bacterial, fungal and viral species from 61 genera. While available, additional information such as pathogen strains and hosts, tissue distribution or habitats, cultivation methods, biochemical characteristics, virulence factors, morphology, diseases, symptoms, treatment and prevention methods are provided. Our Database covers 242 gene targets, 700 primers/probes, 340 virulence factors, and 261 diseases. Cross-links to the NCBI genome and SwissProt/UniProt databases are provided. (C) 2012 Elsevier B.V. All rights reserved.",
keywords = "Microbial pathogen, Diagnostic methods, Database, Microbial pathogen, Diagnostic methods, Database",
author = "Bor-Cheng Han and Wei, {X. N.} and Zhang, {J. X.} and Truong, {N. Q. T.} and Westgate, {C. L.} and Zhao, {R. Y.} and Chen, {Y. Z.}",
year = "2013",
month = "1",
doi = "10.1016/j.meegid.2012.10.017",
language = "English",
volume = "13",
pages = "261--266",
journal = "Infection, Genetics and Evolution",
issn = "1567-1348",
publisher = "Elsevier",

}

TY - JOUR

T1 - MicrobPad MD

T2 - Microbial pathogen diagnostic methods database

AU - Han, Bor-Cheng

AU - Wei, X. N.

AU - Zhang, J. X.

AU - Truong, N. Q. T.

AU - Westgate, C. L.

AU - Zhao, R. Y.

AU - Chen, Y. Z.

PY - 2013/1

Y1 - 2013/1

N2 - Medical pathogens induce infections, illnesses and sometimes serious medical conditions in the infected hosts. Diagnosis of these pathogens is important for proper treatment and investigation of pathogenesis processes. Molecular techniques have been developed for facilitating accurate, sensitive and low-cost diagnosis of these pathogens. Based on these techniques, diagnostic devices have been developed for a number of pathogens. More devices are needed for comprehensive coverage of medical pathogens. To facilitate the development of these devices, a database with integrated information about diagnostic methods, targets, and primers/probes for the known bacterial, fungal and viral pathogens is needed. We developed the microbial pathogen diagnostic methods database MicrobPad MD (http://bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp or http://pha-bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp) to provide comprehensive information about the molecular diagnostic techniques, targets, primers/probes, detection procedures and conditions, and tested diagnostic accuracies and limit of diagnosis for 314 bacterial, fungal and viral species from 61 genera. While available, additional information such as pathogen strains and hosts, tissue distribution or habitats, cultivation methods, biochemical characteristics, virulence factors, morphology, diseases, symptoms, treatment and prevention methods are provided. Our Database covers 242 gene targets, 700 primers/probes, 340 virulence factors, and 261 diseases. Cross-links to the NCBI genome and SwissProt/UniProt databases are provided. (C) 2012 Elsevier B.V. All rights reserved.

AB - Medical pathogens induce infections, illnesses and sometimes serious medical conditions in the infected hosts. Diagnosis of these pathogens is important for proper treatment and investigation of pathogenesis processes. Molecular techniques have been developed for facilitating accurate, sensitive and low-cost diagnosis of these pathogens. Based on these techniques, diagnostic devices have been developed for a number of pathogens. More devices are needed for comprehensive coverage of medical pathogens. To facilitate the development of these devices, a database with integrated information about diagnostic methods, targets, and primers/probes for the known bacterial, fungal and viral pathogens is needed. We developed the microbial pathogen diagnostic methods database MicrobPad MD (http://bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp or http://pha-bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp) to provide comprehensive information about the molecular diagnostic techniques, targets, primers/probes, detection procedures and conditions, and tested diagnostic accuracies and limit of diagnosis for 314 bacterial, fungal and viral species from 61 genera. While available, additional information such as pathogen strains and hosts, tissue distribution or habitats, cultivation methods, biochemical characteristics, virulence factors, morphology, diseases, symptoms, treatment and prevention methods are provided. Our Database covers 242 gene targets, 700 primers/probes, 340 virulence factors, and 261 diseases. Cross-links to the NCBI genome and SwissProt/UniProt databases are provided. (C) 2012 Elsevier B.V. All rights reserved.

KW - Microbial pathogen

KW - Diagnostic methods

KW - Database

KW - Microbial pathogen

KW - Diagnostic methods

KW - Database

UR - https://www.scopus.com/record/display.uri?eid=2-s2.0-84875260572&origin=resultslist&sort=plf-f&src=s&st1=MicrobPad+MD%3a+Microbial+pathogen+diagnostic+methods+database&st2=&sid=43F4300B92D5874B564FD81D3981F52C.aqHV0EoE4xlIF3hgVWgA%3a1070&sot=b&sdt=b&sl=75&s=TITLE-ABS-KEY%28MicrobPad+MD%3a+Microbial+pathogen+diagnostic+methods+database%29&relpos=0&citeCnt=0&searchTerm=

U2 - 10.1016/j.meegid.2012.10.017

DO - 10.1016/j.meegid.2012.10.017

M3 - Article

VL - 13

SP - 261

EP - 266

JO - Infection, Genetics and Evolution

JF - Infection, Genetics and Evolution

SN - 1567-1348

ER -