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研究成果

  • 1013 引文
  • 13 h-指數
  • 36 文章

A bacterial pioneer produces cellulase complexes that persist through community succession

Kolinko, S., Wu, Y. W., Tachea, F., Denzel, E., Hiras, J., Gabriel, R., Bäcker, N., Chan, L. J. G., Eichorst, S. A., Frey, D., Chen, Q., Azadi, P., Adams, P. D., Pray, T. R., Tanjore, D., Petzold, C. J., Gladden, J. M., Simmons, B. A. & Singer, S. W., 一月 1 2018, 於 : Nature Microbiology. 3, 1, p. 99-107 9 p.

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9 引文 斯高帕斯(Scopus)

A genome-centric approach reveals a novel glycosyltransferase from the ga a07 strain of bacillus thuringiensis responsible for catalyzing 15-o-glycosylation of ganoderic acid a

Chang, T. S., Wang, T. Y., Hsueh, T. Y., Lee, Y. W., Chuang, H. M., Cai, W. X., Wu, J. Y., Chiang, C. M. & Wu, Y. W., 十月 2 2019, 於 : International Journal of Molecular Sciences. 20, 20, 5192.

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A new triterpenoid glucoside from a novel acidic glycosylation of ganoderic acid a via recombinant glycosyltransferase of bacillus subtilis

Chang, T. S., Chiang, C. M., Kao, Y. H., Wu, J. Y., Wu, Y. W. & Wang, T. Y., 九月 24 2019, 於 : Molecules. 24, 19, 3457.

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1 引文 斯高帕斯(Scopus)

A novel abundance-based algorithm for binning metagenomic sequences using l-tuples

Wu, Y. W. & Ye, Y., 三月 1 2011, 於 : Journal of Computational Biology. 18, 3, p. 523-534 12 p.

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81 引文 斯高帕斯(Scopus)
7 引文 斯高帕斯(Scopus)
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Comparative community proteomics demonstrates the unexpected importance of actinobacterial glycoside hydrolase family 12 protein for crystalline cellulose hydrolysis

Hiras, J., Wu, Y. W., Deng, K., Nicora, C. D., Aldrich, J. T., Frey, D., Kolinko, S., Robinson, E. W., Jacobs, J. M., Adams, P. D., Northen, T. R., Simmons, B. A. & Singer, S. W., 七月 1 2016, 於 : mBio. 7, 4, e01106-16.

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9 引文 斯高帕斯(Scopus)

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software

Sczyrba, A., Hofmann, P., Belmann, P., Koslicki, D., Janssen, S., Dröge, J., Gregor, I., Majda, S., Fiedler, J., Dahms, E., Bremges, A., Fritz, A., Garrido-Oter, R., Jørgensen, T. S., Shapiro, N., Blood, P. D., Gurevich, A., Bai, Y., Turaev, D., DeMaere, M. Z. 及其他47, Chikhi, R., Nagarajan, N., Quince, C., Meyer, F., Balvočiūtė, M., Hansen, L. H., Sørensen, S. J., Chia, B. K. H., Denis, B., Froula, J. L., Wang, Z., Egan, R., Don Kang, D., Cook, J. J., Deltel, C., Beckstette, M., Lemaitre, C., Peterlongo, P., Rizk, G., Lavenier, D., Wu, Y-W., Singer, S. W., Jain, C., Strous, M., Klingenberg, H., Meinicke, P., Barton, M. D., Lingner, T., Lin, H-H., Liao, Y-C., Silva, G. G. Z., Cuevas, D. A., Edwards, R. A., Saha, S., Piro, V. C., Renard, B. Y., Pop, M., Klenk, H-P., Göker, M., Kyrpides, N. C., Woyke, T., Vorholt, J. A., Schulze-Lefert, P., Rubin, E. M., Darling, A. E., Rattei, T. & McHardy, A. C., 十一月 2017, 於 : Nature Methods. 14, 11, p. 1063-1071 9 p.

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131 引文 斯高帕斯(Scopus)

Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times

Liang, X., Whitham, J. M., Holwerda, E. K., Shao, X., Tian, L., Wu, Y-W., Lombard, V., Henrissat, B., Klingeman, D. M., Yang, Z. K., Podar, M., Richard, T. L., Elkins, J. G., Brown, S. D. & Lynd, L. R., 2018, 於 : Biotechnology for Biofuels. 11, 1

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6 引文 斯高帕斯(Scopus)

Discovery of enzymes for toluene synthesis from anoxic microbial communities

Beller, H. R., Rodrigues, A. V., Zargar, K., Wu, Y. W., Saini, A. K., Saville, R. M., Pereira, J. H., Adams, P. D., Tringe, S. G., Petzold, C. J. & Keasling, J. D., 五月 1 2018, 於 : Nature Chemical Biology. 14, 5, p. 451-457 7 p.

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16 引文 斯高帕斯(Scopus)

Diverse CRISPRs evolving in human microbiomes

Rho, M., Wu, Y. W., Tang, H., Doak, T. G. & Ye, Y., 六月 2012, 於 : PLoS Genetics. 8, 6, e1002441.

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75 引文 斯高帕斯(Scopus)

Draft genome sequence of Zobellella denitrificans ZD1 (JCM 13380), a salt-tolerant denitrifying bacterium capable of producing poly(3-hydroxybutyrate)

Wu, Y. W., Shao, Y., Khanipov, K., Golovko, G., Pimenova, M., Fofanov, Y. & Chu, K. H., 一月 1 2017, 於 : Genome Announcements. 5, 36

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2 引文 斯高帕斯(Scopus)

Editing site analysis in a gymnosperm mitochondrial genome reveals similarities with angiosperm mitochondrial genomes

Salmans, M. L., Chaw, S. M., Lin, C. P., Shih, A. C. C., Wu, Y. W. & Mulligan, R. M., 十月 2010, 於 : Current Genetics. 56, 5, p. 439-446 8 p.

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17 引文 斯高帕斯(Scopus)
10 引文 斯高帕斯(Scopus)

Genomic Analysis of Xylose Metabolism in Members of the Deinoccocus-Thermus Phylum from Thermophilic Biomass-Deconstructing Bacterial Consortia

Wu, Y. W., Joshua, C., Eichorst, S. A., Gladden, J. M., Simmons, B. A. & Singer, S. W., 三月 12 2015, 於 : Bioenergy Research. 8, 3, p. 1031-1038 8 p.

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3 引文 斯高帕斯(Scopus)

Identification and resolution of microdiversity through metagenomic sequencing of parallel consortia

Nelson, W. C., Maezato, Y., Wu, Y. W., Romine, M. F. & Lindemann, S. R., 2016, 於 : Applied and Environmental Microbiology. 82, 1, p. 255-267 13 p.

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21 引文 斯高帕斯(Scopus)

Ionic Liquids Impact the Bioenergy Feedstock-Degrading Microbiome and Transcription of Enzymes Relevant to Polysaccharide Hydrolysis

Wu, Y-W., Higgins, B., Yu, C., Reddy, A. P., Ceballos, S., Joh, L. D., Simmons, B. A., Singer, S. W. & VanderGheynst, J. S., 十二月 17 2016, 於 : mSystems. 1, 6

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5 引文 斯高帕斯(Scopus)

Large circular plasmids from groundwater plasmidomes span multiple incompatibility groups and are enriched in multimetal resistance genes

Kothari, A., Wu, Y. W., Chandonia, J. M., Charrier, M., Rajeev, L., Rocha, A. M., Joyner, D. C., Hazen, T. C., Singer, S. W. & Mukhopadhyay, A., 一月 1 2019, 於 : mBio. 10, 1, e02899-18.

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4 引文 斯高帕斯(Scopus)

MaxBin: An automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm

Wu, Y. W., Tang, Y. H., Tringe, S. G., Simmons, B. A. & Singer, S. W., 三月 4 2014, 於 : Microbiome. 2, 1, 26.

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183 引文 斯高帕斯(Scopus)

MaxBin 2.0: An automated binning algorithm to recover genomes from multiple metagenomic datasets

Wu, Y. W., Simmons, B. A. & Singer, S. W., 九月 15 2015, 於 : Bioinformatics. 32, 4, p. 605-607 3 p.

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180 引文 斯高帕斯(Scopus)

Metabolic characteristics of dominant microbes and key rare species from an acidic hot spring in Taiwan revealed by metagenomics

Lin, K. H., Liao, B. Y., Chang, H. W., Huang, S. W., Chang, T. Y., Yang, C. Y., Wang, Y. B., Lin, Y. T. K., Wu, Y. W., Tang, S. L. & Yu, H. T., 十二月 3 2015, 於 : BMC Genomics. 16, 1, 1029.

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8 引文 斯高帕斯(Scopus)

Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera

Yang, S. H., Tandon, K., Lu, C. Y., Wada, N., Shih, C. J., Hsiao, S. S. Y., Jane, W. N., Lee, T. C., Yang, C. M., Liu, C. T., Denis, V., Wu, Y. T., Wang, L. T., Huang, L., Lee, D. C., Wu, Y. W., Yamashiro, H. & Tang, S. L., 一月 4 2019, 於 : Microbiome. 7, 1, 3.

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7 引文 斯高帕斯(Scopus)

Microbial community structure and functional potential along a hypersaline gradient

Kimbrel, J. A., Ballor, N., Wu, Y-W., David, M. M., Hazen, T. C., Simmons, B. A., Singer, S. W. & Jansson, J. K., 2018, 於 : Frontiers in Microbiology. 9, JUL

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3 引文 斯高帕斯(Scopus)

Microbial Functional Responses to Cholesterol Catabolism in Denitrifying Sludge

Wei, S. T-S., Wu, Y-W., Lee, T-H., Huang, Y-S., Yang, C-Y., Chen, Y-L. & Chiang, Y-R., 十一月 13 2018, 於 : mSystems. 3, 5

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11 引文 斯高帕斯(Scopus)

Phylo-mLogo: An interactive and hierarchical multiple-logo visualization tool for alignment of many sequences

Shih, A. C. C., Lee, D. T., Peng, C. L. & Wu, Y. W., 2007, 於 : BMC Bioinformatics. 8, 63.

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19 引文 斯高帕斯(Scopus)

Refining the phylum Chlorobi by resolving the phylogeny and metabolic potential of the representative of a deeply branching, uncultivated lineage

Hiras, J., Wu, Y. W., Eichorst, S. A., Simmons, B. A. & Singer, S. W., 四月 1 2016, 於 : ISME Journal. 10, 4, p. 833-845 13 p.

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24 引文 斯高帕斯(Scopus)

SinicView: A visualization environment for comparisons of multiple nucleotide sequence alignment tools

Shih, A. C. C., Lee, D. T., Lin, L., Peng, C. L., Chen, S. H., Wu, Y. W., Wong, C. Y., Chou, M. Y., Shiao, T. C. & Hsieh, M. F., 三月 2 2006, 於 : BMC Bioinformatics. 7, 103.

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14 引文 斯高帕斯(Scopus)

Stitching gene fragments with a network matching algorithm improves gene assembly for metagenomics

Wu, Y. W., Rho, M., Doak, T. G. & Ye, Y., 九月 2012, 於 : Bioinformatics. 28, 18, bts388.

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9 引文 斯高帕斯(Scopus)

Stout camphor tree genome fills gaps in understanding of flowering plant genome evolution

Chaw, S. M., Liu, Y. C., Wu, Y. W., Wang, H. Y., Lin, C. Y. I., Wu, C. S., Ke, H. M., Chang, L. Y., Hsu, C. Y., Yang, H. T., Sudianto, E., Hsu, M. H., Wu, K. P., Wang, L. N., Leebens-Mack, J. H. & Tsai, I. J., 一月 1 2019, 於 : Nature Plants. 5, 1, p. 63-73 11 p.

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6 引文 斯高帕斯(Scopus)

The gain and loss of chromosomal integron systems in the Treponema species

Wu, Y. W., Doak, T. G. & Ye, Y., 2013, 於 : BMC Evolutionary Biology. 13, 1, 16.

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5 引文 斯高帕斯(Scopus)

The mitochondrial genome of the gymnosperm Cycas taitungensis contains a novel family of short interspersed elements, Bpu sequences, and abundant RNA editing sites

Chaw, S. M., Chun-Chieh Shih, A., Wang, D., Wu, Y. W., Liu, S. M. & Chou, T. Y., 三月 2008, 於 : Molecular Biology and Evolution. 25, 3, p. 603-615 13 p.

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93 引文 斯高帕斯(Scopus)

Transcriptomic analysis of the highly efficient oil-degrading bacterium Acinetobacter venetianus RAG-1 reveals genes important in dodecane uptake and utilization

Kothari, A., Charrier, M., Wu, Y. W., Malfatti, S., Zhou, C. E., Singer, S. W., Dugan, L. & Mukhopadhyay, A., 2016, 於 : FEMS Microbiology Letters. 363, 20, fnw224.

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2 引文 斯高帕斯(Scopus)

Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA

Wang, D., Wu, Y. W., Shih, A. C. C., Wu, C. S., Wang, Y. N. & Chaw, S. M., 九月 2007, 於 : Molecular Biology and Evolution. 24, 9, p. 2040-2048 9 p.

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51 引文 斯高帕斯(Scopus)