Additional file 1: Figure S1. of ezTree: an automated pipeline for identifying phylogenetic marker genes and inferring evolutionary relationships among uncultivated prokaryotic draft genomes

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The comparison of trees built for the set of Proteobacteria genomes provided by FastTree. Figure S2. The comparison of trees built for the set of Myxococcales genomes using different models provided by FastTree. Table S1. List of Proteobacteria genomes and their NCBI accession numbers used in the evaluation of ezTree. Table S2. List of Syntrophobacterales genomes and NCBI accession numbers used in inferring the tree for Smithella sp. SDB. Table S3. Single-copy marker genes identified for Syntrophobacterales genomes. Table S4. List of Methanomicrobia genomes and NCBI accession numbers used in inferring the tree for Methanoculleus sp. SDB, Methanolinea sp. SDB, and Methanosaeta sp. SDB. Table S5. Single-copy marker genes identified for Methanomicrobia genomes. Table S6. List of Myxococcales genomes and NCBI accession numbers used in inferring the tree for Sorangiineae bacterium NIC37A_2. Table S7. Single-copy marker genes identified for Myxococcales. (PDF 827 kb)
可用日期一月 19 2018
發行者Unknown Publisher

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