Quantitation of severe acute respiratory syndrome coronavirus genome by real-time polymerase chain reaction assay using minor groove binder DNA probe technology

Hsi Hsun Lin, Shiow J. Wang, Yung Ching Liu, S. S J Lee, Chun K. Hwang, Yao Shen Chen, Shue R. Wann, Yi L. Shih

Research output: Contribution to journalArticle

4 Citations (Scopus)

Abstract

The ability to rapidly recognize severe acute respiratory syndrome coronavirus (SARS-CoV) as a cause of infections is critical to quickly limiting further spread of the disease. A rapid, sensitive, and specific laboratory diagnostic test is needed to confirm outbreaks of SARS-CoV infection and distinguish it from other diseases that can cause similar clinical symptoms. An improved TaqMan technology using minor groove binder (MGB) probes was used to detect and quantify SARS-CoV in suspected patients. SARS-CoV primers and probe were designed based on the open reading frame 1b sequence, which encodes coronavirus replicase protein. A linear standard curve with R2 > 0.99 was obtained, and the threshold sensitivity was 10 genome equivalents per reaction. Interassay coefficients of variation were 1.73 to 2.72%, indicating good reproducibility of this method. A total of 228 specimens from 151 suspected patients were quantified by this method, 13 specimens from 6 patients were positive with viral load range from 362 to 36,240,000 genome equivalents/mL. In conclusion, the high sensitivity and reproducibility of the real-time polymerase chain reaction SARS-CoV RNA quantitation using MGB probe allowed the screening of large numbers of clinical samples.

Original languageEnglish
Pages (from-to)258-265
Number of pages8
JournalJournal of Microbiology, Immunology and Infection
Volume37
Issue number5
Publication statusPublished - Oct 2004
Externally publishedYes

Fingerprint

Severe Acute Respiratory Syndrome
Coronavirus
DNA Probes
Real-Time Polymerase Chain Reaction
Genome
Technology
Coronavirus Infections
Viral Load
Routine Diagnostic Tests
Open Reading Frames
Disease Outbreaks
RNA
Infection
Proteins

Keywords

  • Diagnosis
  • DNA probes
  • Polymerase chain reaction
  • SARS virus

ASJC Scopus subject areas

  • Immunology and Microbiology(all)
  • Immunology and Allergy
  • Microbiology (medical)

Cite this

Quantitation of severe acute respiratory syndrome coronavirus genome by real-time polymerase chain reaction assay using minor groove binder DNA probe technology. / Lin, Hsi Hsun; Wang, Shiow J.; Liu, Yung Ching; Lee, S. S J; Hwang, Chun K.; Chen, Yao Shen; Wann, Shue R.; Shih, Yi L.

In: Journal of Microbiology, Immunology and Infection, Vol. 37, No. 5, 10.2004, p. 258-265.

Research output: Contribution to journalArticle

Lin, Hsi Hsun ; Wang, Shiow J. ; Liu, Yung Ching ; Lee, S. S J ; Hwang, Chun K. ; Chen, Yao Shen ; Wann, Shue R. ; Shih, Yi L. / Quantitation of severe acute respiratory syndrome coronavirus genome by real-time polymerase chain reaction assay using minor groove binder DNA probe technology. In: Journal of Microbiology, Immunology and Infection. 2004 ; Vol. 37, No. 5. pp. 258-265.
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