MicrobPad MD: Microbial pathogen diagnostic methods database

Bor-Cheng Han, X. N. Wei, J. X. Zhang, N. Q. T. Truong, C. L. Westgate, R. Y. Zhao, Y. Z. Chen

Research output: Contribution to journalArticle

Abstract

Medical pathogens induce infections, illnesses and sometimes serious medical conditions in the infected hosts. Diagnosis of these pathogens is important for proper treatment and investigation of pathogenesis processes. Molecular techniques have been developed for facilitating accurate, sensitive and low-cost diagnosis of these pathogens. Based on these techniques, diagnostic devices have been developed for a number of pathogens. More devices are needed for comprehensive coverage of medical pathogens. To facilitate the development of these devices, a database with integrated information about diagnostic methods, targets, and primers/probes for the known bacterial, fungal and viral pathogens is needed. We developed the microbial pathogen diagnostic methods database MicrobPad MD (http://bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp or http://pha-bidd.nus.edu.sg/group/MicrobPad/MicrobPad.asp) to provide comprehensive information about the molecular diagnostic techniques, targets, primers/probes, detection procedures and conditions, and tested diagnostic accuracies and limit of diagnosis for 314 bacterial, fungal and viral species from 61 genera. While available, additional information such as pathogen strains and hosts, tissue distribution or habitats, cultivation methods, biochemical characteristics, virulence factors, morphology, diseases, symptoms, treatment and prevention methods are provided. Our Database covers 242 gene targets, 700 primers/probes, 340 virulence factors, and 261 diseases. Cross-links to the NCBI genome and SwissProt/UniProt databases are provided. (C) 2012 Elsevier B.V. All rights reserved.
Original languageEnglish
Pages (from-to)261-266
Number of pages6
JournalInfection, Genetics and Evolution
Volume13
DOIs
Publication statusPublished - Jan 2013

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diagnostic techniques
pathogen
Databases
pathogens
Virulence Factors
Viperidae
Equipment and Supplies
Molecular Diagnostic Techniques
probe
virulence
Protein Databases
Tissue Distribution
Ecosystem
method
Genome
tissue distribution
Costs and Cost Analysis
Infection
pathogenesis
genome

Keywords

  • Microbial pathogen
  • Diagnostic methods
  • Database

Cite this

Han, B-C., Wei, X. N., Zhang, J. X., Truong, N. Q. T., Westgate, C. L., Zhao, R. Y., & Chen, Y. Z. (2013). MicrobPad MD: Microbial pathogen diagnostic methods database. Infection, Genetics and Evolution, 13, 261-266. https://doi.org/10.1016/j.meegid.2012.10.017

MicrobPad MD : Microbial pathogen diagnostic methods database. / Han, Bor-Cheng; Wei, X. N.; Zhang, J. X.; Truong, N. Q. T.; Westgate, C. L.; Zhao, R. Y.; Chen, Y. Z.

In: Infection, Genetics and Evolution, Vol. 13, 01.2013, p. 261-266.

Research output: Contribution to journalArticle

Han, B-C, Wei, XN, Zhang, JX, Truong, NQT, Westgate, CL, Zhao, RY & Chen, YZ 2013, 'MicrobPad MD: Microbial pathogen diagnostic methods database', Infection, Genetics and Evolution, vol. 13, pp. 261-266. https://doi.org/10.1016/j.meegid.2012.10.017
Han, Bor-Cheng ; Wei, X. N. ; Zhang, J. X. ; Truong, N. Q. T. ; Westgate, C. L. ; Zhao, R. Y. ; Chen, Y. Z. / MicrobPad MD : Microbial pathogen diagnostic methods database. In: Infection, Genetics and Evolution. 2013 ; Vol. 13. pp. 261-266.
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