KIDFamMap: A database of kinase-inhibitor-disease family maps for kinase inhibitor selectivity and binding mechanisms

Yi Yuan Chiu, Chih Ta Lin, Jhang Wei Huang, Kai Cheng Hsu, Jen Hu Tseng, Syuan Ren You, Jinn Moon Yang

Research output: Contribution to journalArticle

14 Citations (Scopus)

Abstract

Kinases play central roles in signaling pathways and are promising therapeutic targets for many diseases. Designing selective kinase inhibitors is an emergent and challenging task, because kinases share an evolutionary conserved ATP-binding site. KIDFamMap (http://gemdock.life.nctu. edu.tw/KIDFamMap/) is the first database to explore kinase-inhibitor families (KIFs) and kinase-inhibitor-disease (KID) relationships for kinase inhibitor selectivity and mechanisms. This database includes 1208 KIFs, 962 KIDs, 55603 kinase-inhibitor interactions (KIIs), 35 788 kinase inhibitors, 399 human protein kinases, 339 diseases and 638 disease allelic variants. Here, a KIF can be defined as follows: (i) the kinases in the KIF with significant sequence similarity, (ii) the inhibitors in the KIF with significant topology similarity and (iii) the KIIs in the KIF with significant interaction similarity. The KIIs within a KIF are often conserved on some consensus KIDFamMap anchors, which represent conserved interactions between the kinase subsites and consensus moieties of their inhibitors. Our experimental results reveal that the members of a KIF often possess similar inhibition profiles. The KIDFamMap anchors can reflect kinase conformations types, kinase functions and kinase inhibitor selectivity. We believe that KIDFamMap provides biological insights into kinase inhibitor selectivity and binding mechanisms.

Original languageEnglish
JournalNucleic Acids Research
Volume41
Issue numberD1
DOIs
Publication statusPublished - Jan 1 2013
Externally publishedYes

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Phosphotransferases
Databases
Protein Kinases

ASJC Scopus subject areas

  • Genetics

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KIDFamMap : A database of kinase-inhibitor-disease family maps for kinase inhibitor selectivity and binding mechanisms. / Chiu, Yi Yuan; Lin, Chih Ta; Huang, Jhang Wei; Hsu, Kai Cheng; Tseng, Jen Hu; You, Syuan Ren; Yang, Jinn Moon.

In: Nucleic Acids Research, Vol. 41, No. D1, 01.01.2013.

Research output: Contribution to journalArticle

Chiu, Yi Yuan ; Lin, Chih Ta ; Huang, Jhang Wei ; Hsu, Kai Cheng ; Tseng, Jen Hu ; You, Syuan Ren ; Yang, Jinn Moon. / KIDFamMap : A database of kinase-inhibitor-disease family maps for kinase inhibitor selectivity and binding mechanisms. In: Nucleic Acids Research. 2013 ; Vol. 41, No. D1.
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