Involvement of the 5' proximal coding sequences of hepatitis C virus with internal initiation of viral translation

Lih Hwa Hwang, Chia Ling Hsieh, Alan Yen, Yi Ling Chung, Ding Shinn Chen

Research output: Contribution to journalArticle

29 Citations (Scopus)

Abstract

The 5' nontranslated region (NTR) of hepatitis C virus (HCV) consists of 341 nucleotides (nt). This region comprises the majority of the internal ribosome entry site (IRES) which controls the efficiency of viral translation. Previous studies of the 3' boundary of the HCV IRES yielded conflicting data regarding the involvement of viral coding sequences in IRES activity. We therefore studied the functional significance of the 5' proximal coding sequences of the HCV core gene on IRES activity. We constructed monocistronic and bicistronic DNAs that contained either a chloramphenicol acetyl transferase (CAT) gene or a luciferase (Luc) gene as the reporter. Results from both in vitro and in vivo experiments indicated that the optimal IRES ranged within nt 1-371. Further mutational analyses of sequences surrounding the initiation codon revealed that primary sequences downstream of the AUG initiator rather than the secondary structure are important in regulating optimal IRES function. We are also able to demonstrate that a non-AUG codon could be used to initiate the synthesis of a reporter protein, albeit with lower efficiency. These findings bear important implications for the HCV IRES secondary structures.

Original languageEnglish
Pages (from-to)455-460
Number of pages6
JournalBiochemical and Biophysical Research Communications
Volume252
Issue number2
DOIs
Publication statusPublished - Nov 18 1998
Externally publishedYes

Fingerprint

Viruses
Hepacivirus
Genes
Nucleotides
Chloramphenicol
Transferases
Luciferases
Initiator Codon
Internal Ribosome Entry Sites
Reporter Genes
DNA
Codon
Sequence Analysis
Proteins
Experiments

ASJC Scopus subject areas

  • Biochemistry
  • Biophysics
  • Molecular Biology

Cite this

Involvement of the 5' proximal coding sequences of hepatitis C virus with internal initiation of viral translation. / Hwang, Lih Hwa; Hsieh, Chia Ling; Yen, Alan; Chung, Yi Ling; Chen, Ding Shinn.

In: Biochemical and Biophysical Research Communications, Vol. 252, No. 2, 18.11.1998, p. 455-460.

Research output: Contribution to journalArticle

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