A robust TDT-type association test under informative parental missingness

Jin-Hua Chen, Kuang-Fu Cheng

Research output: Contribution to journalArticle

1 Citation (Scopus)

Abstract

Many family-based association tests rely on the random transmission of alleles from parents to offspring. Among them, the transmission/disequilibrium test (TDT) may be considered to be the most popular statistical test. The TDT statistic and its variations were proposed to evaluate nonrandom transmission of alleles from parents to the diseased children. However, in family studies, parental genotypes may be missing due to parental death, loss, divorce, or other reasons. Under some missingness conditions, nonrandom transmission of alleles may still occur even when the gene and disease are not associated. As a consequence, the usual TDT-type tests would produce excessive false positive conclusions in association studies. In this paper, we propose a novel TDT-type association test which is not only simple in computation but also robust to the joint effect of population stratification and informative parental missingness. Our test is model-free and allows for different mechanisms of parental missingness across subpopulations. We use a simulation study to compare the performance of the new test with TDT and point out the advantage of the new method.

Original languageEnglish
Pages (from-to)291-297
Number of pages7
JournalStatistics in Medicine
Volume30
Issue number3
DOIs
Publication statusPublished - Feb 10 2011
Externally publishedYes

Fingerprint

Alleles
Parental Death
Parents
Divorce
Genotype
Population
Genes
Transmission Conditions
Statistical test
Stratification
False Positive
Test Statistic
Simulation Study
Gene
Evaluate

Keywords

  • Association test
  • Case-parents study
  • Informative missingness
  • Robustness
  • Transmission/disequilibrium test

ASJC Scopus subject areas

  • Epidemiology
  • Statistics and Probability

Cite this

A robust TDT-type association test under informative parental missingness. / Chen, Jin-Hua; Cheng, Kuang-Fu.

In: Statistics in Medicine, Vol. 30, No. 3, 10.02.2011, p. 291-297.

Research output: Contribution to journalArticle

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