Projects per year
Personal profile
Education
- 2012 Ph.D., School of Informatics, Indiana University
- 2000 M.S., Department of Computer Science, National Tsing Hua University
- 1998 B.S. Department of Computer Science, Tunghai University
Experience
- 2020- Associate Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
- 2016-2020 Assistant Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
- 2016 Project Assistant Research Fellow, Graduate Institute of Biomedical Informatics, Taipei Medical University
- 2016 Postdoctoral Research Fellow, Biodiversity Research Center, Academia Sinica
- 2012-2016 Postdoctoral Research Fellow, Lawrence Berkeley National Lab, USA
- 2007-2012 Research Assistant, School of Informatics and Computing, Indiana University, USA
- 2005-2007 Research Assistant, Institute of Information Science, Academia Sinica
- 2000-2005 Software Engineer, Institute for Information Industry
Research Interests
- Bioinformatics, Metagenomics, Machine Learning
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Projects
- 14 Finished
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運用機器學習演算法透過基因體資訊挖掘未知基因的功能與預測細菌抗藥性(3/3)
8/1/21 → 7/31/22
Project: A - Government Institution › b - Ministry of Science and Technology
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透過非監督式微生物群基因體分類工具深度挖掘與分析微生物如何影響疾病的產生(1/3)
8/1/21 → 7/31/22
Project: A - Government Institution › b - Ministry of Science and Technology
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運用機器學習演算法透過基因體資訊挖掘未知基因的功能與預測細菌抗藥性(2/3)
8/1/20 → 7/1/21
Project: A - Government Institution › b - Ministry of Science and Technology
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A Genome-Based Machine Learning Approach for Mining the Functional Potentials of Hypothetical Genes and Predicting Bacterial Antimicrobial-Resistance Phenotypes(1/3)
8/1/19 → 7/31/20
Project: A - Government Institution › b - Ministry of Science and Technology
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使用Kmer 與神經網路進行智慧影像辨識與分類
1/1/19 → 12/31/19
Project: C - Project of Alliance › m - National Taiwan University of Science and Technology
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Association of Fecal and Plasma Levels of Short-Chain Fatty Acids with Gut Microbiota and Clinical Severity in Patients with Parkinson Disease
Chen, S. J., Chen, C. C., Liao, H. Y., Lin, Y. T., Wu, Y. W., Liou, J. M., Wu, M. S., Kuo, C. H. & Lin, C. H., Feb 22 2022, In: Neurology. 98, 8, p. E848-E858Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Enhancing predictions of antimicrobial resistance of pathogens by expanding the potential resistance gene repertoire using a pan-genome-based feature selection approach
Yang, M. R. & Wu, Y. W., Apr 2022, In: BMC Bioinformatics. 23, 131.Research output: Contribution to journal › Article › peer-review
Open Access -
Omics and mechanistic insights into di-(2-ethylhexyl) phthalate degradation in the O2-fluctuating estuarine sediments
Wang, P. H., Chen, Y. L., Wu, T. Y., Wu, Y. W., Wang, T. Y., Shih, C. J., Wei, S. T. S., Lai, Y. L., Liu, C. X. & Chiang, Y. R., Jul 2022, In: Chemosphere. 299, 134406.Research output: Contribution to journal › Article › peer-review
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Biotransformation of celastrol to a novel, well-soluble, low-toxic and anti-oxidative celastrol-29-O-β-glucoside by Bacillus glycosyltransferases
Chang, T. S., Wang, T. Y., Chiang, C. M., Lin, Y. J., Chen, H. L., Wu, Y. W., Ting, H. J. & Wu, J. Y., Feb 2021, In: Journal of Bioscience and Bioengineering. 131, 2, p. 176-182 7 p.Research output: Contribution to journal › Article › peer-review
10 Citations (Scopus) -
Characterization of the complete mitochondrial genome of Abscondita cerata (Olivier, 1911) (Coleoptera: Lampyridae) and its phylogenetic implications
Wang, L. J., Wu, Y. W. & Wang, T. Y., 2021, In: Mitochondrial DNA Part B: Resources. 6, 9, p. 2528-2530 3 p.Research output: Contribution to journal › Article › peer-review
Open Access
Datasets
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MOESM13 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Podar, M. (Creator), Wu, Y. (Creator), Lombard, V. (Creator), Whitham, J. M. (Creator), Holwerda, E. K. (Creator), Yang, Z. K. (Creator), Shao, X. (Contributor), Henrissat, B. (Creator), Brown, S. D. (Creator), Liang, X. (Contributor), Tian, L. (Creator), Elkins, J. G. (Creator), Lynd, L. R. (Creator), Klingeman, D. M. (Creator) & Richard, T. L. (Creator), Figshare, 2018
DOI: 10.6084/m9.figshare.7057025.v1, https://doi.org/10.6084%2Fm9.figshare.7057025.v1
Dataset
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MOESM3 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Klingeman, D. M. (Creator), Henrissat, B. (Creator), Elkins, J. G. (Creator), Wu, Y. (Creator), Podar, M. (Creator), Yang, Z. K. (Creator), Holwerda, E. K. (Creator), Shao, X. (Contributor), Brown, S. D. (Creator), Tian, L. (Creator), Richard, T. L. (Creator), Whitham, J. M. (Creator), Lombard, V. (Creator), Lynd, L. R. (Creator) & Liang, X. (Contributor), Figshare, 2018
DOI: 10.6084/m9.figshare.7057073.v1, https://doi.org/10.6084%2Fm9.figshare.7057073.v1
Dataset
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MOESM10 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Podar, M. (Creator), Yang, Z. K. (Creator), Wu, Y. (Creator), Holwerda, E. K. (Creator), Shao, X. (Contributor), Brown, S. D. (Creator), Lombard, V. (Creator), Lynd, L. R. (Creator), Henrissat, B. (Creator), Liang, X. (Contributor), Richard, T. L. (Creator), Tian, L. (Creator), Elkins, J. G. (Creator), Whitham, J. M. (Creator) & Klingeman, D. M. (Creator), Figshare, 2018
DOI: 10.6084/m9.figshare.7056971.v1, https://doi.org/10.6084%2Fm9.figshare.7056971.v1
Dataset
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MOESM2 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Brown, S. D. (Creator), Shao, X. (Contributor), Podar, M. (Creator), Holwerda, E. K. (Creator), Klingeman, D. M. (Creator), Yang, Z. K. (Creator), Tian, L. (Creator), Richard, T. L. (Creator), Elkins, J. G. (Creator), Henrissat, B. (Creator), Wu, Y. (Creator), Lynd, L. R. (Creator), Lombard, V. (Creator), Whitham, J. M. (Creator) & Liang, X. (Contributor), Figshare, 2018
DOI: 10.6084/m9.figshare.7057064.v1, https://doi.org/10.6084%2Fm9.figshare.7057064.v1
Dataset
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MOESM8 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Elkins, J. G. (Creator), Brown, S. D. (Creator), Lynd, L. R. (Creator), Richard, T. L. (Creator), Tian, L. (Creator), Henrissat, B. (Creator), Whitham, J. M. (Creator), Holwerda, E. K. (Creator), Klingeman, D. M. (Creator), Wu, Y. (Creator), Lombard, V. (Creator), Yang, Z. K. (Creator), Shao, X. (Contributor), Podar, M. (Creator) & Liang, X. (Contributor), Figshare, 2018
DOI: 10.6084/m9.figshare.7057112.v1, https://doi.org/10.6084%2Fm9.figshare.7057112.v1
Dataset