Yu-Wei Wu

Associate Professor, Graduate Institute of Biomedical Informatics
Member, Research Center for Artificial Intelligence in Medicine, Taipei Medical University

https://orcid.org/0000-0002-5603-1194

Emailyuwei.wu@tmu.edu.tw

Source: Scopus
Calculated based on no. of publications stored in Pure and citations from Scopus

Research activity per year

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Personal profile

Education

2012 Ph.D., School of Informatics, Indiana University
2000 M.S., Department of Computer Science, National Tsing Hua University
1998 B.S. Department of Computer Science, Tunghai University

Experience

2020- Associate Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
2016-2020 Assistant Professor, Graduate Institute of Biomedical Informatics, Taipei Medical University
2016 Project Assistant Research Fellow, Graduate Institute of Biomedical Informatics, Taipei Medical University
2016 Postdoctoral Research Fellow, Biodiversity Research Center, Academia Sinica
2012-2016 Postdoctoral Research Fellow, Lawrence Berkeley National Lab, USA
2007-2012 Research Assistant, School of Informatics and Computing, Indiana University, USA
2005-2007 Research Assistant, Institute of Information Science, Academia Sinica
2000-2005 Software Engineer, Institute for Information Industry

Research Interests

Bioinformatics, Metagenomics, Machine Learning

URL

https://sites.google.com/site/yuwwubioinfo/

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1 Active
9 Finished

運用機器學習演算法透過基因體資訊挖掘未知基因的功能與預測細菌抗藥性(2/3)
Wu, Y.
8/1/20 → 7/1/21
Project: A - Government Institution › b - Ministry of Science and Technology
A Genome-Based Machine Learning Approach for Mining the Functional Potentials of Hypothetical Genes and Predicting Bacterial Antimicrobial-Resistance Phenotypes(1/3)
Wu, Y.
8/1/19 → 7/31/20
Project: A - Government Institution › b - Ministry of Science and Technology
使用Kmer 與神經網路進行智慧影像辨識與分類
Wu, Y.
1/1/19 → 12/31/19
Project: C - Project of Alliance › m - National Taiwan University of Science and Technology
使用Kmer 與神經網路進行智慧影像辨識與分類
Wu, Y.
1/1/19 → 12/31/19
Project: C - Project of Alliance › m - National Taiwan University of Science and Technology
利用基因網絡分析尋找假定蛋白質（hypothetical protein)與抗藥性的關係
Wu, Y.
7/1/18 → 2/28/19
Project: A - Government Institution › b - Ministry of Science and Technology

1486 Citations
15 h-Index
41 Article
1 Conference contribution
1 Review article

Biotransformation of celastrol to a novel, well-soluble, low-toxic and anti-oxidative celastrol-29-O-β-glucoside by Bacillus glycosyltransferases
Chang, T. S., Wang, T. Y., Chiang, C. M., Lin, Y. J., Chen, H. L., Wu, Y. W., Ting, H. J. & Wu, J. Y., Feb 2021, In: Journal of Bioscience and Bioengineering. 131, 2, p. 176-182 7 p.
Research output: Contribution to journal › Article › peer-review
Untargeted metabolomics predicts the functional outcome of ischemic stroke
Chi, N. F., Chang, T. H., Lee, C. Y., Wu, Y. W., Shen, T. A., Chan, L., Chen, Y. R., Chiou, H. Y., Hsu, C. Y. & Hu, C. J., Jan 1 2021, In: Journal of the Formosan Medical Association. 120, 1P1, p. 234-241 8 p.
Research output: Contribution to journal › Article › peer-review

Open Access
Artificial intelligence-assisted prediction of preeclampsia: Development and external validation of a nationwide health insurance dataset of the BPJS Kesehatan in Indonesia
Sufriyana, H., Wu, Y. W. & Su, E. C. Y., Apr 2020, In: EBioMedicine. 54, 102710.
Research output: Contribution to journal › Article › peer-review

Open Access
1 Citation (Scopus)
A two-stage multi-fidelity design optimization for K-mer-based pattern recognition (KPR) in image processing
Yao, Y. T., Wu, Y. W. & Lin, P. T., 2020, 46th Design Automation Conference (DAC). American Society of Mechanical Engineers(ASME), V11BT11A031. (Proceedings of the ASME Design Engineering Technical Conference; vol. 11B-2020).
Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Characterization of TMAO productivity from carnitine challenge facilitates personalized nutrition and microbiome signatures discovery
Wu, W. K., Panyod, S., Liu, P. Y., Chen, C. C., Kao, H. L., Chuang, H. L., Chen, Y. H., Zou, H. B., Kuo, H. C., Kuo, C. H., Liao, B. Y., Chiu, T. H. T., Chung, C. H., Lin, A. Y. C., Lee, Y. C., Tang, S. L., Wang, J. T., Wu, Y. W., Hsu, C. C., Sheen, L. Y. & 2 others, Orekhov, A. N. & Wu, M. S., Dec 2020, In: Microbiome. 8, 1, 162.
Research output: Contribution to journal › Article › peer-review

Open Access

MOESM3 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Liang, X. (Contributor), Whitham, J. (Contributor), Holwerda, E. (Contributor), Shao, X. (Contributor), Tian, L. (Contributor), Wu, Y. (Contributor), Lombard, V. (Contributor), Henrissat, B. (Contributor), Klingeman, D. (Contributor), Yang, Z. (Contributor), Podar, M. (Contributor), Richard, T. (Contributor), Elkins, J. (Contributor), Brown, S. (Contributor) & Lynd, L. (Contributor), Unknown Publisher, Jan 1 2018
DOI: 10.6084/m9.figshare.7057073.v1, https://springernature.figshare.com/articles/MOESM3_of_Development_and_characterization_of_stable_anaerobic_thermophilic_methanogenic_microbiomes_fermenting_switchgrass_at_decreasing_residence_times/7057073/1
Dataset
Metagenomic, phylogenetic, and functional characterization of predominant endolithic green sulfur bacteria in the coral Isopora palifera
Yang, S. (Contributor), Tandon, K. (Contributor), Lu, C. (Contributor), Wada, N. (Contributor), Shih, C. (Contributor), Hsiao, S. (Contributor), Jane, W. (Contributor), Lee, T. (Contributor), Yang, C. (Contributor), Liu, C. (Contributor), Denis, V. (Contributor), Wu, Y. (Contributor), Wang, L. (Contributor), Huang, L. (Contributor), Lee, D. (Contributor), Wu, Y. (Contributor), Yamashiro, H. (Contributor) & Tang, S. (Contributor), Unknown Publisher, Jan 4 2019
DOI: 10.6084/m9.figshare.c.4355186.v1, https://springernature.figshare.com/collections/Metagenomic_phylogenetic_and_functional_characterization_of_predominant_endolithic_green_sulfur_bacteria_in_the_coral_Isopora_palifera/4355186/1
Dataset
MOESM2 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Liang, X. (Contributor), Whitham, J. (Contributor), Holwerda, E. (Contributor), Shao, X. (Contributor), Tian, L. (Contributor), Wu, Y. (Contributor), Lombard, V. (Contributor), Henrissat, B. (Contributor), Klingeman, D. (Contributor), Yang, Z. (Contributor), Podar, M. (Contributor), Richard, T. (Contributor), Elkins, J. (Contributor), Brown, S. (Contributor) & Lynd, L. (Contributor), Unknown Publisher, Jan 1 2018
DOI: 10.6084/m9.figshare.7057064.v1, https://springernature.figshare.com/articles/MOESM2_of_Development_and_characterization_of_stable_anaerobic_thermophilic_methanogenic_microbiomes_fermenting_switchgrass_at_decreasing_residence_times/7057064/1
Dataset
MOESM4 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Liang, X. (Contributor), Whitham, J. (Contributor), Holwerda, E. (Contributor), Shao, X. (Contributor), Tian, L. (Contributor), Wu, Y. (Contributor), Lombard, V. (Contributor), Henrissat, B. (Contributor), Klingeman, D. (Contributor), Yang, Z. (Contributor), Podar, M. (Contributor), Richard, T. (Contributor), Elkins, J. (Contributor), Brown, S. (Contributor) & Lynd, L. (Contributor), Unknown Publisher, Jan 1 2018
DOI: 10.6084/m9.figshare.7057082.v1, https://springernature.figshare.com/articles/MOESM4_of_Development_and_characterization_of_stable_anaerobic_thermophilic_methanogenic_microbiomes_fermenting_switchgrass_at_decreasing_residence_times/7057082/1
Dataset
MOESM5 of Development and characterization of stable anaerobic thermophilic methanogenic microbiomes fermenting switchgrass at decreasing residence times
Liang, X. (Contributor), Whitham, J. (Contributor), Holwerda, E. (Contributor), Shao, X. (Contributor), Tian, L. (Contributor), Wu, Y. (Contributor), Lombard, V. (Contributor), Henrissat, B. (Contributor), Klingeman, D. (Contributor), Yang, Z. (Contributor), Podar, M. (Contributor), Richard, T. (Contributor), Elkins, J. (Contributor), Brown, S. (Contributor) & Lynd, L. (Contributor), Unknown Publisher, Jan 1 2018
DOI: 10.6084/m9.figshare.7057094.v1, https://springernature.figshare.com/articles/MOESM5_of_Development_and_characterization_of_stable_anaerobic_thermophilic_methanogenic_microbiomes_fermenting_switchgrass_at_decreasing_residence_times/7057094/1
Dataset