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Research Output

  • 797 Citations
  • 14 h-Index
  • 40 Article
  • 6 Conference contribution
  • 1 Chapter
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Article
2020

Curation of cancer hallmark-based genes and pathways for in silico characterization of chemical carcinogenesis

Liang, P. I., Wang, C. C., Cheng, H. J., Wang, S. S., Lin, Y. C., Lin, P. & Tung, C. W., Jan 1 2020, In : Database : the journal of biological databases and curation. 2020

Research output: Contribution to journalArticle

Open Access

Identification of time-invariant biomarkers for non-genotoxic hepatocarcinogen assessment

Huang, S. H., Lin, Y. C. & Tung, C. W., Jun 2 2020, In : International journal of environmental research and public health. 17, 12, p. 1-14 14 p., 4298.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Leveraging complementary computational models for prioritizing chemicals of developmental and reproductive toxicity concern: an example of food contact materials

Tung, C. W., Cheng, H. J., Wang, C. C., Wang, S. S. & Lin, P., Jan 1 2020, (Accepted/In press) In : Archives of Toxicology.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Potential risk of higenamine misuse in sports: Evaluation of lotus plumule extract products and a human study

Yen, C. C., Tung, C. W., Chang, C. W., Tsai, C. C., Hsu, M. C. & Wu, Y. T., Feb 2020, In : Nutrients. 12, 2, 285.

Research output: Contribution to journalArticle

Open Access

Prediction of human fetal-maternal blood concentration ratio of chemicals

Wang, C. C., Lin, P., Chou, C. Y., Wang, S. S. & Tung, C. W., Jul 21 2020, In : PeerJ. 8, e9562.

Research output: Contribution to journalArticle

Open Access
2019

Transfer learning for predicting human skin sensitizers

Tung, C. W., Lin, Y. H. & Wang, S. S., Apr 1 2019, In : Archives of Toxicology. 93, 4, p. 931-940 10 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2018

ChemDIS 2: An update of chemical-disease inference system

Tung, C. W. & Wang, S. S., Jan 1 2018, In : Database. 2018, 2018

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

ChemDIS-Mixture: An online tool for analyzing potential interaction effects of chemical mixtures

Tung, C. W., Wang, C. C., Wang, S. S. & Lin, P., Dec 1 2018, In : Scientific Reports. 8, 1, 10047.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Discovery of pyrazolo[4,3-c]quinolines derivatives as potential anti-inflammatory agents through inhibiting of no production

Tseng, C. H., Tung, C. W., Peng, S. I., Chen, Y. L., Tzeng, C. C. & Cheng, C. M., Jan 1 2018, In : Molecules. 23, 5, 1036.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Human immunodeficiency virus Tat-TIP30 interaction promotes metastasis by enhancing the nuclear translocation of Snail in lung cancer cell lines

Liu, Y. P., Chen, C. H., Yen, C. H., Tung, C. W., Chen, C. J., Chen, Y. M. A. & Huang, M. S., Oct 1 2018, In : Cancer Science. 109, 10, p. 3105-3114 10 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Mechanism-informed read-across assessment of skin sensitizers based on SkinSensDB

Tung, C. W., Wang, C. C. & Wang, S. S., Apr 1 2018, In : Regulatory Toxicology and Pharmacology. 94, p. 276-282 7 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2017

Determination of cannabinoids in hemp nut products in Taiwan by HPLC-MS/MS coupled with chemometric analysis: quality evaluation and a pilot human study

Chang, C. W., Tung, C. W., Tsai, C. C., Wu, Y. T. & Hsu, M. C., Jun 1 2017, In : Drug Testing and Analysis. 9, 6, p. 888-897 10 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)

Discovery of indeno[1,2-c]quinoline derivatives as potent dual antituberculosis and anti-inflammatory agents

Tseng, C. H., Tung, C. W., Wu, C. H., Tzeng, C. C., Chen, Y. H., Hwang, T. L. & Chen, Y. L., Jun 1 2017, In : Molecules. 22, 6, 1001.

Research output: Contribution to journalArticle

Open Access
16 Citations (Scopus)

Identification of consensus biomarkers for predicting non-genotoxic hepatocarcinogens

Huang, S. H. & Tung, C. W., Jan 24 2017, In : Scientific Reports. 7, 41176.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

Identification of informative features for predicting proinflammatory potentials of engine exhausts

Wang, C. C., Lin, Y. C., Lin, Y. C., Jhang, S. R. & Tung, C. W., Aug 18 2017, In : BioMedical Engineering Online. 16, 66.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Profiling transcriptomes of human SH-SY5Y neuroblastoma cells exposed to maleic acid

Wang, C. C., Lin, Y. C., Cheng, Y. H. & Tung, C. W., Jan 1 2017, In : PeerJ. 2017, 4, e3175.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

SkinSensDB: a curated database for skin sensitization assays

Wang, C. C., Lin, Y. C., Wang, S. S., Shih, C., Lin, Y. H. & Tung, C. W., Jan 31 2017, In : Journal of Cheminformatics. 9, 1, p. 1-6 6 p.

Research output: Contribution to journalArticle

Open Access
7 Citations (Scopus)
2016

Attenuation of antigen-specific T helper 1 immunity by Neolitsea hiiranensis and its derived terpenoids

Cheng, Y. H., Chen, I. S., Lin, Y. C., Tung, C. W., Chang, H. S. & Wang, C. C., Jan 1 2016, In : PeerJ. 2016, 12, e2758.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Plasma matrix metalloproteinase 1 improves the detection and survival prediction of esophageal squamous cell carcinoma

Chen, Y. K., Tung, C. W., Lee, J. Y., Hung, Y. C., Lee, C. H., Chou, S. H., Lin, H. S., Wu, M. T. & Wu, I. C., Jul 20 2016, In : Scientific Reports. 6, 30057.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)
2015

ChemDIS: A chemical-disease inference system based on chemical-protein interactions

Tung, C. W., Jun 15 2015, In : Journal of Cheminformatics. 7, 1, 25.

Research output: Contribution to journalArticle

Open Access
10 Citations (Scopus)

Developing a QSAR model for hepatotoxicity screening of the active compounds in traditional Chinese medicines

Huang, S. H., Tung, C. W., Fülöp, F. & Li, J. H., Apr 1 2015, In : Food and Chemical Toxicology. 78, p. 71-77 7 p.

Research output: Contribution to journalArticle

40 Citations (Scopus)
2014

An in silico toxicogenomics approach for inferring potential diseases associated with maleic acid

Lin, Y. C., Wang, C. C. & Tung, C. W., Nov 5 2014, In : Chemico-Biological Interactions. 223, p. 38-44 7 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

A testing strategy to predict risk for drug-induced liver injury in humans using high-content screen assays and the 'rule-of-two' model

Chen, M., Tung, C. W., Shi, Q., Guo, L., Shi, L., Fang, H., Borlak, J. & Tong, W., Jan 1 2014, In : Archives of Toxicology. 88, 7, p. 1439-1449 11 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Interpretable prediction of non-genotoxic hepatocarcinogenic chemicals

Tung, C. W. & Jheng, J. L., Dec 5 2014, In : Neurocomputing. 145, p. 68-74 7 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Public databases of plant natural products for computational drug discovery

Tung, C. W., Jan 1 2014, In : Current Computer-Aided Drug Design. 10, 3, p. 191-196 6 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Rule-based knowledge acquisition method for promoter prediction in human and drosophila species

Huang, W. L., Tung, C. W., Liaw, C., Huang, H. L. & Ho, S. Y., Mar 6 2014, In : The Scientific World Journal. 2014, 327306.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)

TIPdb-3D: The three-dimensional structure database of phytochemicals from Taiwan indigenous plants

Tung, C. W., Lin, Y. C., Chang, H. S., Wang, C. C., Chen, I. S., Jheng, J. L. & Li, J. H., Jan 1 2014, In : Database. 2014

Research output: Contribution to journalArticle

Open Access
12 Citations (Scopus)
2013

Identification of biomarkers for esophageal squamous cell carcinoma using feature selection and decision tree methods

Tung, C. W., Wu, M. T., Chen, Y. K., Wu, C. C., Chen, W. C., Li, H. P., Chou, S. H., Wu, D. C. & Wu, I. C., Dec 1 2013, In : The Scientific World Journal. 2013, 782031.

Research output: Contribution to journalArticle

Open Access
19 Citations (Scopus)

Prediction and Analysis of Antibody Amyloidogenesis from Sequences

Liaw, C., Tung, C. W. & Ho, S. Y., Jan 15 2013, In : PLoS One. 8, 1, e53235.

Research output: Contribution to journalArticle

Open Access
15 Citations (Scopus)

Prediction of pupylation sites using the composition of k-spaced amino acid pairs

Tung, C. W., Nov 7 2013, In : Journal of Theoretical Biology. 336, p. 11-17 7 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

TIPdb: A database of anticancer, antiplatelet, and antituberculosis phytochemicals from indigenous plants in Taiwan

Lin, Y. C., Wang, C. C., Chen, I. S., Jheng, J. L., Li, J. H. & Tung, C. W., Jun 11 2013, In : The Scientific World Journal. 2013, 736386.

Research output: Contribution to journalArticle

Open Access
21 Citations (Scopus)
2012

PupDB: A database of pupylated proteins

Tung, C. W., Mar 16 2012, In : BMC Bioinformatics. 13, 1, 40.

Research output: Contribution to journalArticle

Open Access
29 Citations (Scopus)
2011

POPISK: T-cell reactivity prediction using support vector machines and string kernels

Tung, C. W., Ziehm, M., Kämper, A., Kohlbacher, O. & Ho, S. Y., Nov 15 2011, In : BMC Bioinformatics. 12, 446.

Research output: Contribution to journalArticle

Open Access
46 Citations (Scopus)
2010

Prediction of protein subchloroplast locations using random forests

Tung, C. W., Liaw, C., Ho, S. J. & Ho, S. Y., May 1 2010, In : World Academy of Science, Engineering and Technology. 65, p. 903-907 5 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Sequence-based prediction of gamma-turn types using a physicochemical property-based decision tree method

Liaw, C., Tung, C. W., Ho, S. J. & Ho, S. Y., May 1 2010, In : World Academy of Science, Engineering and Technology. 65, p. 898-902 5 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2009

Predicting protein subnuclear localization using GO-amino-acid composition features

Huang, W. L., Tung, C. W., Huang, H. L. & Ho, S. Y., Nov 1 2009, In : BioSystems. 98, 2, p. 73-79 7 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)
2008

Computational identification of ubiquitylation sites from protein sequences

Tung, C. W. & Ho, S. Y., Jul 15 2008, In : BMC Bioinformatics. 9, 310.

Research output: Contribution to journalArticle

Open Access
130 Citations (Scopus)

ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization

Huang, W. L., Tung, C. W., Ho, S. W., Hwang, S. F. & Ho, S. Y., Feb 1 2008, In : BMC Bioinformatics. 9, 80.

Research output: Contribution to journalArticle

Open Access
97 Citations (Scopus)
2007

POPI: Predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties

Tung, C. W. & Ho, S. Y., Apr 15 2007, In : Bioinformatics. 23, 8, p. 942-949 8 p.

Research output: Contribution to journalArticle

Open Access
77 Citations (Scopus)

ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features

Huang, W. L., Tung, C. W., Huang, H. L., Hwang, S. F. & Ho, S. Y., Sep 1 2007, In : BioSystems. 90, 2, p. 573-581 9 p.

Research output: Contribution to journalArticle

62 Citations (Scopus)