- Taipei Medical University
- Center for Cell Therapy and Regeneration Medicine
- Center for Cell Therapy and Regeneration Medicine-Team for alveolar bone regeneration
- Center for Cell Therapy and Regeneration Medicine-Team for difficult wound care
- Center for Cell Therapy and Regeneration Medicine-Team for immune cell cancer therapy
- Center for Cell Therapy and Regeneration Medicine-Team for Neuroregeneration
- Center for Cell Therapy and Regeneration Medicine-Team for ophthalmology
- Center for Cell Therapy and Regeneration Medicine-Team for respiratory
- Center for General Education
- Cochrane Taiwan
- College of Biomedical Engineering
- College of Humanities and Social Sciences
- College of Management
- College of Medical Science and Technology
- Graduate Institute of Biomedical Informatics
- Master Program in Graduate Institute of Cancer Biology and Drug Discovery
- Ph.D. Program for Cancer Molecular Biology and Drug Discovery
- School of Medical Laboratory Science and Biotechnology
- The Ph.D. Program for Neural Regenerative Medicine
- The Ph.D. Program for Translational Medicine
- College of Medicine
- Graduate Institute of Clinical Medicine
- Graduate Institute of Medical Sciences
- International Ph.D. Program for Cell Therapy and Regeneration Medicine
- Professional Master Program in Artificial Intelligence in Medicine
- School of Medicine
- Department of Anatomy and Cell Biology
- Department of Anesthesiology
- Department of Biochemistry and Molecular Cell Biology
- Department of Dermatology
- Department of Emergency
- Department of Family Medicine
- Department of General Medicine
- Department of Humanities in Medicine
- Department of Internal Medicine
- Department of Medical Humanities - Former organisational unit. 1/1/16.
- Department of Microbiology and Immunology
- Department of Molecular Parasitology and Tropical Diseases
- Department of Neurology
- Department of Obstetrics and Gynecology
- Department of Ophthalmology
- Department of Orthopedics
- Department of Otolaryngology
- Department of Pathology
- Department of Pediatrics
- Department of Pharmacology
- Department of Physical Medicine and Rehabilitation
- Department of Physiology
- Department of Psychiatry
- Department of Public Health
- Department of Radiology
- Department of Surgery
- Department of Urology
- School of Respiratory Therapy
- College of Nursing
- College of Nutrition
- College of Oral Medicine
- College of Pharmacy
- College of Public Health
- Core Facility Center
- Joint Biobank
- Laboratory Animal Center
- Research Center of Thoracic Medicine
- Research Center of Thoracic Medicine-Asthma
- Research Center of Thoracic Medicine-Chronic Airway Disease
- Research Center of Thoracic Medicine-Critical Care Medicine Group
- Research Center of Thoracic Medicine-Invasive Bronchoscopy Group
- Research Center of Thoracic Medicine-Lung Cancer Group
- Research Center of Thoracic Medicine-Sleep Group
- Research Center of Thoracic Medicine-TB
- Taipei Medical University Hospital
- Taipei Medical University Shuang Ho Hospital
- Taipei Municipal Wanfang Hospital
- TMU Biomedical Commercialization Center
- TMU Neuroscience Research Center
- TMU Neuroscience Research Center - Child Development
- TMU Neuroscience Research Center - Mental Health
- TMU Neuroscience Research Center - NeuroImage
- TMU Neuroscience Research Center - Other
- TMU Neuroscience Research Center - Peripheral Neurophysiology
- TMU Neuroscience Research Center - Platelet Neurotrophins for Neurorestorative Biotherapy
- TMU Neuroscience Research Center - Retinopathy
- TMU Neuroscience Research Center - Sleep Medicine
- TMU Neuroscience Research Center - TBI
- TMU Neuroscience Research Center - Vascular Dementia
- TMU Research Center of Artificial Intelligence in Medicine and Health(TAIMH)
- TMU Research Center of Biomedical Devices Prototyping Production
- TMU Research Center of Cancer Translational Medicine
- TMU Research Center of Health and Welfare Policy
- Center for Cell Therapy and Regeneration Medicine